STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMG39283.1Conserved hypothetical protein, steroid delta-isomerase-related. (133 aa)    
Predicted Functional Partners:
SMG39290.1
Hypothetical protein.
 
     0.969
SMG39312.1
Predicted amidohydrolase.
 
     0.967
SMG06856.1
Protein-tyrosine-phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
 
    0.817
SMG13565.1
Glutamate synthase (NADPH) large subunit.
    
  0.565
SMG39267.1
Capsular polysaccharide transport system permease protein.
       0.508
SMG39274.1
Capsular polysaccharide transport system ATP-binding protein.
       0.508
greA
Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides.
   
    0.468
SMG51114.1
Cytochrome P450.
  
 
  0.458
SMG06870.1
Uncharacterized protein, UPF0262 family; Belongs to the UPF0262 family.
       0.451
Your Current Organism:
Paracoccus sp. J56
NCBI taxonomy Id: 935850
Other names: P. sp. J56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.