STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000427425_00963Unannotated protein. (257 aa)    
Predicted Functional Partners:
GCA_000427425_00547
Unannotated protein.
   
   0.979
GCA_000427425_02037
Unannotated protein.
 
 
 0.951
GCA_000427425_00545
Unannotated protein.
   
 
 0.943
GCA_000427425_01747
Unannotated protein.
 
 
 0.943
GCA_000427425_01708
Unannotated protein.
  
   0.940
GCA_000427425_00457
Unannotated protein.
 
 
 0.930
GCA_000427425_01742
Unannotated protein.
  
 
 0.927
GCA_000427425_01748
Unannotated protein.
  
 
 0.925
GCA_000427425_01713
Unannotated protein.
  
   0.924
GCA_000427425_01718
Unannotated protein.
   
 
 0.914
Your Current Organism:
Caldanaerobius polysaccharolyticus
NCBI taxonomy Id: 935948
Other names: C. polysaccharolyticus DSM 13641, Caldanaerobius polysaccharolyticus DSM 13641, Caldanaerobius polysaccharolyticus KMTHCJ, Caldanaerobius polysaccharolyticus str. DSM 13641, Caldanaerobius polysaccharolyticus strain DSM 13641, anaerobic thermophile KMTHCJ
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.