SNRPD2 protein (Dasypus novemcinctus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Dasypus novemcinctus

NCBI taxonomy Id: 9361
Other names: D. novemcinctus, nine-banded armadillo

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSDNOP00000006127	LSM2	ENSDNOP00000006127	ENSDNOP00000002042	annotation not available	LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.996
ENSDNOP00000006127	LSM7	ENSDNOP00000006127	ENSDNOP00000034488	annotation not available	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.987
ENSDNOP00000006127	LSM8	ENSDNOP00000006127	ENSDNOP00000028992	annotation not available	LSM8 homolog, U6 small nuclear RNA associated.	0.995
ENSDNOP00000006127	SF3B5	ENSDNOP00000006127	ENSDNOP00000018262	annotation not available	Splicing factor 3b subunit 5.	0.987
ENSDNOP00000006127	SNRNP70	ENSDNOP00000006127	ENSDNOP00000018610	annotation not available	Small nuclear ribonucleoprotein U1 subunit 70.	0.996
ENSDNOP00000006127	SNRPD1	ENSDNOP00000006127	ENSDNOP00000024062	annotation not available	Small nuclear ribonucleoprotein D1 polypeptide.	0.998
ENSDNOP00000006127	SNRPD2	ENSDNOP00000006127	ENSDNOP00000001836	annotation not available	Small nuclear ribonucleoprotein D2 polypeptide.	0.999
ENSDNOP00000006127	SNRPE	ENSDNOP00000006127	ENSDNOP00000003464	annotation not available	Small nuclear ribonucleoprotein polypeptide E.	0.977
ENSDNOP00000006127	SNRPG	ENSDNOP00000006127	ENSDNOP00000026422	annotation not available	Small nuclear ribonucleoprotein polypeptide G.	0.989
LOC101429780	LSM2	ENSDNOP00000029768	ENSDNOP00000002042	Small nuclear ribonucleoprotein-associated proteins B and B.	LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.996
LOC101429780	LSM7	ENSDNOP00000029768	ENSDNOP00000034488	Small nuclear ribonucleoprotein-associated proteins B and B.	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.987
LOC101429780	LSM8	ENSDNOP00000029768	ENSDNOP00000028992	Small nuclear ribonucleoprotein-associated proteins B and B.	LSM8 homolog, U6 small nuclear RNA associated.	0.995
LOC101429780	SF3B5	ENSDNOP00000029768	ENSDNOP00000018262	Small nuclear ribonucleoprotein-associated proteins B and B.	Splicing factor 3b subunit 5.	0.987
LOC101429780	SNRNP70	ENSDNOP00000029768	ENSDNOP00000018610	Small nuclear ribonucleoprotein-associated proteins B and B.	Small nuclear ribonucleoprotein U1 subunit 70.	0.996
LOC101429780	SNRPD1	ENSDNOP00000029768	ENSDNOP00000024062	Small nuclear ribonucleoprotein-associated proteins B and B.	Small nuclear ribonucleoprotein D1 polypeptide.	0.998
LOC101429780	SNRPD2	ENSDNOP00000029768	ENSDNOP00000001836	Small nuclear ribonucleoprotein-associated proteins B and B.	Small nuclear ribonucleoprotein D2 polypeptide.	0.999
LOC101429780	SNRPE	ENSDNOP00000029768	ENSDNOP00000003464	Small nuclear ribonucleoprotein-associated proteins B and B.	Small nuclear ribonucleoprotein polypeptide E.	0.977
LOC101429780	SNRPG	ENSDNOP00000029768	ENSDNOP00000026422	Small nuclear ribonucleoprotein-associated proteins B and B.	Small nuclear ribonucleoprotein polypeptide G.	0.989
LSM2	ENSDNOP00000006127	ENSDNOP00000002042	ENSDNOP00000006127	LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated.	annotation not available	0.996
LSM2	LOC101429780	ENSDNOP00000002042	ENSDNOP00000029768	LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated.	Small nuclear ribonucleoprotein-associated proteins B and B.	0.996