SNRPF protein (Dasypus novemcinctus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Dasypus novemcinctus

NCBI taxonomy Id: 9361
Other names: D. novemcinctus, nine-banded armadillo

Export your current network:

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same PNG format, but at higher resolution

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LSM10	LSM2	ENSDNOP00000026276	ENSDNOP00000002042	LSM10, U7 small nuclear RNA associated.	LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.982
LSM10	LSM3	ENSDNOP00000026276	ENSDNOP00000028057	LSM10, U7 small nuclear RNA associated.	LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.992
LSM10	LSM7	ENSDNOP00000026276	ENSDNOP00000034488	LSM10, U7 small nuclear RNA associated.	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.987
LSM10	LSM8	ENSDNOP00000026276	ENSDNOP00000028992	LSM10, U7 small nuclear RNA associated.	LSM8 homolog, U6 small nuclear RNA associated.	0.985
LSM10	PHF5A	ENSDNOP00000026276	ENSDNOP00000024783	LSM10, U7 small nuclear RNA associated.	PHD finger protein 5A.	0.959
LSM10	SF3B5	ENSDNOP00000026276	ENSDNOP00000018262	LSM10, U7 small nuclear RNA associated.	Splicing factor 3b subunit 5.	0.978
LSM10	SNRNP70	ENSDNOP00000026276	ENSDNOP00000018610	LSM10, U7 small nuclear RNA associated.	Small nuclear ribonucleoprotein U1 subunit 70.	0.955
LSM10	SNRPD1	ENSDNOP00000026276	ENSDNOP00000024062	LSM10, U7 small nuclear RNA associated.	Small nuclear ribonucleoprotein D1 polypeptide.	0.627
LSM10	SNRPD2	ENSDNOP00000026276	ENSDNOP00000001836	LSM10, U7 small nuclear RNA associated.	Small nuclear ribonucleoprotein D2 polypeptide.	0.997
LSM10	SNRPF	ENSDNOP00000026276	ENSDNOP00000022480	LSM10, U7 small nuclear RNA associated.	Small nuclear ribonucleoprotein polypeptide F.	0.994
LSM2	LSM10	ENSDNOP00000002042	ENSDNOP00000026276	LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated.	LSM10, U7 small nuclear RNA associated.	0.982
LSM2	LSM3	ENSDNOP00000002042	ENSDNOP00000028057	LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated.	LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.999
LSM2	LSM7	ENSDNOP00000002042	ENSDNOP00000034488	LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated.	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.999
LSM2	LSM8	ENSDNOP00000002042	ENSDNOP00000028992	LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated.	LSM8 homolog, U6 small nuclear RNA associated.	0.999
LSM2	PHF5A	ENSDNOP00000002042	ENSDNOP00000024783	LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated.	PHD finger protein 5A.	0.996
LSM2	SF3B5	ENSDNOP00000002042	ENSDNOP00000018262	LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated.	Splicing factor 3b subunit 5.	0.995
LSM2	SNRNP70	ENSDNOP00000002042	ENSDNOP00000018610	LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated.	Small nuclear ribonucleoprotein U1 subunit 70.	0.929
LSM2	SNRPD1	ENSDNOP00000002042	ENSDNOP00000024062	LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated.	Small nuclear ribonucleoprotein D1 polypeptide.	0.998
LSM2	SNRPD2	ENSDNOP00000002042	ENSDNOP00000001836	LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated.	Small nuclear ribonucleoprotein D2 polypeptide.	0.999
LSM2	SNRPF	ENSDNOP00000002042	ENSDNOP00000022480	LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated.	Small nuclear ribonucleoprotein polypeptide F.	0.998