STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBY83498.1Polysaccharide lyase family protein 8. (748 aa)    
Predicted Functional Partners:
CBY83501.1
Putative ABC-2 type transport system permease protein.
     
 0.774
CBY83502.1
Putative ABC-2 type transport system permease protein.
     
 0.774
CBY83499.1
Branched-chain amino acid transport protein.
       0.773
CBY83500.1
Branched-chain amino acid transport protein.
       0.773
CBY83503.1
Putative uncharacterized protein.
       0.773
CBY83504.1
Putative outer membrane efflux protein.
       0.773
CBY83505.1
Magnesium and cobalt efflux protein.
       0.773
CBY83506.1
Possible phosphate permease.
  
    0.655
CBY82259.1
Putative Cytochrome C assembly protein.
     
 0.547
CBY83507.1
Putative purine nucleoside phosphorylase.
       0.478
Your Current Organism:
Helicobacter felis
NCBI taxonomy Id: 936155
Other names: H. felis ATCC 49179, Helicobacter felis ATCC 49179, Helicobacter felis CCUG 28539, Helicobacter felis CS1, Helicobacter felis str. ATCC 49179, Helicobacter felis strain ATCC 49179
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