CVT25_004051 protein (Psilocybe cyanescens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CVT25_004051

E3 ubiquitin-protein ligase PEP5. (1087 aa)

Predicted Functional Partners:

CVT25_007459

0.998

CVT25_005670

0.997

CVT25_014845

0.997

CVT25_003787

0.997

CVT25_006827

0.997

CVT25_005850

0.991

CVT25_010472

0.971

CVT25_001283

0.971

CVT25_009760

0.968

CVT25_014339

0.967

Your Current Organism:

Psilocybe cyanescens

NCBI taxonomy Id: 93625
Other names: P. cyanescens, PRM 901481

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CVT25_001283	CVT25_003787	A0A409XMA6	A0A409WX31	CNH domain-containing protein.	CNH domain-containing protein.	0.916
CVT25_001283	CVT25_004051	A0A409XMA6	A0A409WXW9	CNH domain-containing protein.	E3 ubiquitin-protein ligase PEP5.	0.971
CVT25_001283	CVT25_005670	A0A409XMA6	A0A409VLC3	CNH domain-containing protein.	Uncharacterized protein.	0.969
CVT25_001283	CVT25_005850	A0A409XMA6	A0A409VM24	CNH domain-containing protein.	Vps8 domain-containing protein.	0.908
CVT25_001283	CVT25_006827	A0A409XMA6	A0A409X778	CNH domain-containing protein.	Probable vacuolar protein sorting-associated protein 16 homolog; Essential for vacuolar protein sorting. Required for vacuole biogenesis, stability and to maintain vacuole morphology.	0.973
CVT25_001283	CVT25_007459	A0A409XMA6	A0A409XVG6	CNH domain-containing protein.	Vacuolar protein sorting-associated protein 41; Required for vacuolar assembly and vacuolar traffic. Belongs to the VPS41 family.	0.966
CVT25_001283	CVT25_009760	A0A409XMA6	A0A409VU82	CNH domain-containing protein.	Uncharacterized protein.	0.863
CVT25_001283	CVT25_010472	A0A409XMA6	A0A409XDE8	CNH domain-containing protein.	Uncharacterized protein.	0.990
CVT25_001283	CVT25_014339	A0A409XMA6	A0A409WU85	CNH domain-containing protein.	Uncharacterized protein.	0.873
CVT25_001283	CVT25_014845	A0A409XMA6	A0A409WEQ6	CNH domain-containing protein.	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family.	0.965
CVT25_003787	CVT25_001283	A0A409WX31	A0A409XMA6	CNH domain-containing protein.	CNH domain-containing protein.	0.916
CVT25_003787	CVT25_004051	A0A409WX31	A0A409WXW9	CNH domain-containing protein.	E3 ubiquitin-protein ligase PEP5.	0.997
CVT25_003787	CVT25_005670	A0A409WX31	A0A409VLC3	CNH domain-containing protein.	Uncharacterized protein.	0.997
CVT25_003787	CVT25_005850	A0A409WX31	A0A409VM24	CNH domain-containing protein.	Vps8 domain-containing protein.	0.924
CVT25_003787	CVT25_006827	A0A409WX31	A0A409X778	CNH domain-containing protein.	Probable vacuolar protein sorting-associated protein 16 homolog; Essential for vacuolar protein sorting. Required for vacuole biogenesis, stability and to maintain vacuole morphology.	0.997
CVT25_003787	CVT25_007459	A0A409WX31	A0A409XVG6	CNH domain-containing protein.	Vacuolar protein sorting-associated protein 41; Required for vacuolar assembly and vacuolar traffic. Belongs to the VPS41 family.	0.997
CVT25_003787	CVT25_009760	A0A409WX31	A0A409VU82	CNH domain-containing protein.	Uncharacterized protein.	0.968
CVT25_003787	CVT25_010472	A0A409WX31	A0A409XDE8	CNH domain-containing protein.	Uncharacterized protein.	0.916
CVT25_003787	CVT25_014339	A0A409WX31	A0A409WU85	CNH domain-containing protein.	Uncharacterized protein.	0.873
CVT25_003787	CVT25_014845	A0A409WX31	A0A409WEQ6	CNH domain-containing protein.	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family.	0.997