CVT25_000583 protein (Psilocybe cyanescens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CVT25_000583

Uncharacterized protein. (133 aa)

Predicted Functional Partners:

CVT25_012202

0.607

CVT25_005731

0.597

CVT25_002966

0.591

CVT25_007050

0.591

CVT25_012326

0.591

CVT25_005896

0.583

CVT25_011624

0.581

CVT25_010530

0.578

CVT25_001296

0.529

CVT25_015852

0.528

Your Current Organism:

Psilocybe cyanescens

NCBI taxonomy Id: 93625
Other names: P. cyanescens, PRM 901481

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CVT25_000583	CVT25_001296	A0A409WZW3	A0A409XF03	Uncharacterized protein.	RNA_pol_L_2 domain-containing protein.	0.529
CVT25_000583	CVT25_002966	A0A409WZW3	A0A409WMT6	Uncharacterized protein.	Uncharacterized protein.	0.591
CVT25_000583	CVT25_005731	A0A409WZW3	A0A409VLJ4	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.597
CVT25_000583	CVT25_005896	A0A409WZW3	A0A409VM16	Uncharacterized protein.	RPOLD domain-containing protein.	0.583
CVT25_000583	CVT25_007050	A0A409WZW3	A0A409WY85	Uncharacterized protein.	Uncharacterized protein.	0.591
CVT25_000583	CVT25_010530	A0A409WZW3	A0A409X2J8	Uncharacterized protein.	Uncharacterized protein.	0.578
CVT25_000583	CVT25_011624	A0A409WZW3	A0A409WIU8	Uncharacterized protein.	RPOL4c domain-containing protein.	0.581
CVT25_000583	CVT25_012202	A0A409WZW3	A0A409XFK8	Uncharacterized protein.	Uncharacterized protein.	0.607
CVT25_000583	CVT25_012326	A0A409WZW3	A0A409XFR4	Uncharacterized protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.591
CVT25_000583	CVT25_015852	A0A409WZW3	A0A409XIG5	Uncharacterized protein.	Uncharacterized protein.	0.528
CVT25_001296	CVT25_000583	A0A409XF03	A0A409WZW3	RNA_pol_L_2 domain-containing protein.	Uncharacterized protein.	0.529
CVT25_001296	CVT25_002966	A0A409XF03	A0A409WMT6	RNA_pol_L_2 domain-containing protein.	Uncharacterized protein.	0.998
CVT25_001296	CVT25_005731	A0A409XF03	A0A409VLJ4	RNA_pol_L_2 domain-containing protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.998
CVT25_001296	CVT25_005896	A0A409XF03	A0A409VM16	RNA_pol_L_2 domain-containing protein.	RPOLD domain-containing protein.	0.998
CVT25_001296	CVT25_007050	A0A409XF03	A0A409WY85	RNA_pol_L_2 domain-containing protein.	Uncharacterized protein.	0.998
CVT25_001296	CVT25_010530	A0A409XF03	A0A409X2J8	RNA_pol_L_2 domain-containing protein.	Uncharacterized protein.	0.999
CVT25_001296	CVT25_011624	A0A409XF03	A0A409WIU8	RNA_pol_L_2 domain-containing protein.	RPOL4c domain-containing protein.	0.998
CVT25_001296	CVT25_012202	A0A409XF03	A0A409XFK8	RNA_pol_L_2 domain-containing protein.	Uncharacterized protein.	0.716
CVT25_001296	CVT25_012326	A0A409XF03	A0A409XFR4	RNA_pol_L_2 domain-containing protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.998
CVT25_001296	CVT25_015852	A0A409XF03	A0A409XIG5	RNA_pol_L_2 domain-containing protein.	Uncharacterized protein.	0.795