CVT25_002214 protein (Psilocybe cyanescens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CVT25_002214

Uncharacterized protein. (296 aa)

Predicted Functional Partners:

CVT25_012605

0.969

CVT25_009460

0.967

CVT25_006122

0.966

CVT25_009160

0.965

CVT25_003445

0.965

CVT25_013438

0.965

CVT25_013117

0.965

CVT25_011173

0.964

CVT25_001833

0.964

CVT25_010907

0.962

Your Current Organism:

Psilocybe cyanescens

NCBI taxonomy Id: 93625
Other names: P. cyanescens, PRM 901481

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CVT25_001833	CVT25_002214	A0A409WQD7	A0A409XF52	Uncharacterized protein.	Uncharacterized protein.	0.964
CVT25_001833	CVT25_003445	A0A409WQD7	A0A409WLW7	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.997
CVT25_001833	CVT25_006122	A0A409WQD7	A0A409WYW6	Uncharacterized protein.	RPOLD domain-containing protein.	0.997
CVT25_001833	CVT25_009160	A0A409WQD7	A0A409VRR1	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.997
CVT25_001833	CVT25_009460	A0A409WQD7	A0A409XD68	Uncharacterized protein.	Uncharacterized protein.	0.997
CVT25_001833	CVT25_010907	A0A409WQD7	A0A409WFP7	Uncharacterized protein.	Uncharacterized protein.	0.997
CVT25_001833	CVT25_011173	A0A409WQD7	A0A409WGS7	Uncharacterized protein.	Uncharacterized protein.	0.998
CVT25_001833	CVT25_012605	A0A409WQD7	A0A409X7Z4	Uncharacterized protein.	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.997
CVT25_001833	CVT25_013117	A0A409WQD7	A0A409XHQ1	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.984
CVT25_001833	CVT25_013438	A0A409WQD7	A0A409WT70	Uncharacterized protein.	DNA-directed RNA polymerase III subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs.	0.996
CVT25_002214	CVT25_001833	A0A409XF52	A0A409WQD7	Uncharacterized protein.	Uncharacterized protein.	0.964
CVT25_002214	CVT25_003445	A0A409XF52	A0A409WLW7	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.965
CVT25_002214	CVT25_006122	A0A409XF52	A0A409WYW6	Uncharacterized protein.	RPOLD domain-containing protein.	0.966
CVT25_002214	CVT25_009160	A0A409XF52	A0A409VRR1	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.965
CVT25_002214	CVT25_009460	A0A409XF52	A0A409XD68	Uncharacterized protein.	Uncharacterized protein.	0.967
CVT25_002214	CVT25_010907	A0A409XF52	A0A409WFP7	Uncharacterized protein.	Uncharacterized protein.	0.962
CVT25_002214	CVT25_011173	A0A409XF52	A0A409WGS7	Uncharacterized protein.	Uncharacterized protein.	0.964
CVT25_002214	CVT25_012605	A0A409XF52	A0A409X7Z4	Uncharacterized protein.	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.969
CVT25_002214	CVT25_013117	A0A409XF52	A0A409XHQ1	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.965
CVT25_002214	CVT25_013438	A0A409XF52	A0A409WT70	Uncharacterized protein.	DNA-directed RNA polymerase III subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs.	0.965