F8PSG7_SERL3 protein (Serpula lacrymans) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

F8PSG7_SERL3

DHHA2 domain-containing protein. (419 aa)

Predicted Functional Partners:

F8QI97_SERL3

0.816

F8QEV0_SERL3

0.791

ATP3

0.734

F8PNV1_SERL3

0.717

F8PV07_SERL3

0.699

ATP16

0.699

F8PM92_SERL3

0.680

F8PPW2_SERL3

0.680

ATP2

0.680

ATP1

0.677

Your Current Organism:

Serpula lacrymans

NCBI taxonomy Id: 936435
Other names: S. lacrymans var. lacrymans S7.3, Serpula lacrymans var. lacrymans S7.3

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ATP1	ATP16	F8QHF9	F8PV13	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	Uncharacterized protein ATP16.	0.997
ATP1	ATP2	F8QHF9	F8Q7N3	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.999
ATP1	ATP3	F8QHF9	F8PRK4	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	Uncharacterized protein ATP3.	0.999
ATP1	F8PM92_SERL3	F8QHF9	F8PM92	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	V-type proton ATPase subunit F; Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	0.866
ATP1	F8PPW2_SERL3	F8QHF9	F8PPW2	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	Uncharacterized protein.	0.996
ATP1	F8PSG7_SERL3	F8QHF9	F8PSG7	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	DHHA2 domain-containing protein.	0.677
ATP1	F8PV07_SERL3	F8QHF9	F8PV07	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	PH domain-containing protein.	0.996
ATP1	F8QEV0_SERL3	F8QHF9	F8QEV0	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	Uncharacterized protein.	0.943
ATP1	F8QI97_SERL3	F8QHF9	F8QI97	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	Uncharacterized protein.	0.999
ATP16	ATP1	F8PV13	F8QHF9	Uncharacterized protein ATP16.	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.997
ATP16	ATP2	F8PV13	F8Q7N3	Uncharacterized protein ATP16.	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.996
ATP16	ATP3	F8PV13	F8PRK4	Uncharacterized protein ATP16.	Uncharacterized protein ATP3.	0.997
ATP16	F8PM92_SERL3	F8PV13	F8PM92	Uncharacterized protein ATP16.	V-type proton ATPase subunit F; Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	0.836
ATP16	F8PPW2_SERL3	F8PV13	F8PPW2	Uncharacterized protein ATP16.	Uncharacterized protein.	0.987
ATP16	F8PSG7_SERL3	F8PV13	F8PSG7	Uncharacterized protein ATP16.	DHHA2 domain-containing protein.	0.699
ATP16	F8QEV0_SERL3	F8PV13	F8QEV0	Uncharacterized protein ATP16.	Uncharacterized protein.	0.877
ATP16	F8QI97_SERL3	F8PV13	F8QI97	Uncharacterized protein ATP16.	Uncharacterized protein.	0.997
ATP2	ATP1	F8Q7N3	F8QHF9	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.999
ATP2	ATP16	F8Q7N3	F8PV13	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	Uncharacterized protein ATP16.	0.996
ATP2	ATP3	F8Q7N3	F8PRK4	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	Uncharacterized protein ATP3.	0.999