F8QKL0_SERL3 protein (Serpula lacrymans) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

F8QKL0_SERL3

Uncharacterized protein. (54 aa)

Predicted Functional Partners:

F8PUY9_SERL3

0.715

F8QF56_SERL3

0.690

F8PKE3_SERL3

0.640

F8Q3X5_SERL3

0.640

F8PKM5_SERL3

0.611

F8PIQ2_SERL3

0.609

F8PSY3_SERL3

0.609

F8PT74_SERL3

0.609

F8Q754_SERL3

0.609

F8PU49_SERL3

0.595

Your Current Organism:

Serpula lacrymans

NCBI taxonomy Id: 936435
Other names: S. lacrymans var. lacrymans S7.3, Serpula lacrymans var. lacrymans S7.3

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F8PIQ2_SERL3	F8PKE3_SERL3	F8PIQ2	F8PKE3	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.914
F8PIQ2_SERL3	F8PKM5_SERL3	F8PIQ2	F8PKM5	Uncharacterized protein.	26S proteasome regulatory subunit RPN1; Acts as a regulatory subunit of the 26 proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.	0.936
F8PIQ2_SERL3	F8PUY9_SERL3	F8PIQ2	F8PUY9	Uncharacterized protein.	Uncharacterized protein.	0.942
F8PIQ2_SERL3	F8Q3X5_SERL3	F8PIQ2	F8Q3X5	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.914
F8PIQ2_SERL3	F8QF56_SERL3	F8PIQ2	F8QF56	Uncharacterized protein.	MPN domain-containing protein.	0.945
F8PIQ2_SERL3	F8QKL0_SERL3	F8PIQ2	F8QKL0	Uncharacterized protein.	Uncharacterized protein.	0.609
F8PKE3_SERL3	F8PIQ2_SERL3	F8PKE3	F8PIQ2	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.914
F8PKE3_SERL3	F8PKM5_SERL3	F8PKE3	F8PKM5	Ubiquitin-like domain-containing protein.	26S proteasome regulatory subunit RPN1; Acts as a regulatory subunit of the 26 proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.	0.968
F8PKE3_SERL3	F8PSY3_SERL3	F8PKE3	F8PSY3	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.914
F8PKE3_SERL3	F8PT74_SERL3	F8PKE3	F8PT74	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.914
F8PKE3_SERL3	F8PUY9_SERL3	F8PKE3	F8PUY9	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.933
F8PKE3_SERL3	F8Q754_SERL3	F8PKE3	F8Q754	Ubiquitin-like domain-containing protein.	AN1-type domain-containing protein.	0.914
F8PKE3_SERL3	F8QF56_SERL3	F8PKE3	F8QF56	Ubiquitin-like domain-containing protein.	MPN domain-containing protein.	0.942
F8PKE3_SERL3	F8QKL0_SERL3	F8PKE3	F8QKL0	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.640
F8PKM5_SERL3	F8PIQ2_SERL3	F8PKM5	F8PIQ2	26S proteasome regulatory subunit RPN1; Acts as a regulatory subunit of the 26 proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.	Uncharacterized protein.	0.936
F8PKM5_SERL3	F8PKE3_SERL3	F8PKM5	F8PKE3	26S proteasome regulatory subunit RPN1; Acts as a regulatory subunit of the 26 proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.	Ubiquitin-like domain-containing protein.	0.968
F8PKM5_SERL3	F8PSY3_SERL3	F8PKM5	F8PSY3	26S proteasome regulatory subunit RPN1; Acts as a regulatory subunit of the 26 proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.	Uncharacterized protein.	0.964
F8PKM5_SERL3	F8PT74_SERL3	F8PKM5	F8PT74	26S proteasome regulatory subunit RPN1; Acts as a regulatory subunit of the 26 proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.	Uncharacterized protein.	0.964
F8PKM5_SERL3	F8PUY9_SERL3	F8PKM5	F8PUY9	26S proteasome regulatory subunit RPN1; Acts as a regulatory subunit of the 26 proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.	Uncharacterized protein.	0.982
F8PKM5_SERL3	F8Q3X5_SERL3	F8PKM5	F8Q3X5	26S proteasome regulatory subunit RPN1; Acts as a regulatory subunit of the 26 proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.	Ubiquitin-like domain-containing protein.	0.981