CD2BP2 protein (Erinaceus europaeus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CD2BP2

CD2 cytoplasmic tail binding protein 2. (343 aa)

Predicted Functional Partners:

SNRNP200

0.980

DDX23

0.962

ENSEEUP00000011134

0.953

TXNL4A

0.938

PRPF6

0.933

EFTUD2

0.911

ENSEEUP00000013081

0.861

TXNL4B

0.856

LOC103123420

0.844

ENSEEUP00000007143

0.844

Your Current Organism:

Erinaceus europaeus

NCBI taxonomy Id: 9365
Other names: E. europaeus, European hedgehog, common hedgehog, western European hedgehog

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CD2BP2	DDX23	ENSEEUP00000000412	ENSEEUP00000008818	CD2 cytoplasmic tail binding protein 2.	Probable ATP-dependent RNA helicase DDX23.	0.962
CD2BP2	EFTUD2	ENSEEUP00000000412	ENSEEUP00000010179	CD2 cytoplasmic tail binding protein 2.	116 kDa U5 small nuclear ribonucleoprotein component.	0.911
CD2BP2	ENSEEUP00000007143	ENSEEUP00000000412	ENSEEUP00000007143	CD2 cytoplasmic tail binding protein 2.	annotation not available	0.844
CD2BP2	ENSEEUP00000011134	ENSEEUP00000000412	ENSEEUP00000011134	CD2 cytoplasmic tail binding protein 2.	annotation not available	0.953
CD2BP2	ENSEEUP00000013081	ENSEEUP00000000412	ENSEEUP00000013081	CD2 cytoplasmic tail binding protein 2.	annotation not available	0.861
CD2BP2	LOC103123420	ENSEEUP00000000412	ENSEEUP00000006755	CD2 cytoplasmic tail binding protein 2.	Small nuclear ribonucleoprotein-associated protein.	0.844
CD2BP2	PRPF6	ENSEEUP00000000412	ENSEEUP00000000155	CD2 cytoplasmic tail binding protein 2.	pre-mRNA processing factor 6.	0.933
CD2BP2	SNRNP200	ENSEEUP00000000412	ENSEEUP00000011188	CD2 cytoplasmic tail binding protein 2.	U5 small nuclear ribonucleoprotein 200 kDa helicase.	0.980
CD2BP2	TXNL4A	ENSEEUP00000000412	ENSEEUP00000008246	CD2 cytoplasmic tail binding protein 2.	Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family.	0.938
CD2BP2	TXNL4B	ENSEEUP00000000412	ENSEEUP00000000222	CD2 cytoplasmic tail binding protein 2.	Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family.	0.856
DDX23	CD2BP2	ENSEEUP00000008818	ENSEEUP00000000412	Probable ATP-dependent RNA helicase DDX23.	CD2 cytoplasmic tail binding protein 2.	0.962
DDX23	EFTUD2	ENSEEUP00000008818	ENSEEUP00000010179	Probable ATP-dependent RNA helicase DDX23.	116 kDa U5 small nuclear ribonucleoprotein component.	0.996
DDX23	ENSEEUP00000007143	ENSEEUP00000008818	ENSEEUP00000007143	Probable ATP-dependent RNA helicase DDX23.	annotation not available	0.937
DDX23	ENSEEUP00000011134	ENSEEUP00000008818	ENSEEUP00000011134	Probable ATP-dependent RNA helicase DDX23.	annotation not available	0.998
DDX23	ENSEEUP00000013081	ENSEEUP00000008818	ENSEEUP00000013081	Probable ATP-dependent RNA helicase DDX23.	annotation not available	0.996
DDX23	LOC103123420	ENSEEUP00000008818	ENSEEUP00000006755	Probable ATP-dependent RNA helicase DDX23.	Small nuclear ribonucleoprotein-associated protein.	0.937
DDX23	PRPF6	ENSEEUP00000008818	ENSEEUP00000000155	Probable ATP-dependent RNA helicase DDX23.	pre-mRNA processing factor 6.	0.997
DDX23	SNRNP200	ENSEEUP00000008818	ENSEEUP00000011188	Probable ATP-dependent RNA helicase DDX23.	U5 small nuclear ribonucleoprotein 200 kDa helicase.	0.994
DDX23	TXNL4A	ENSEEUP00000008818	ENSEEUP00000008246	Probable ATP-dependent RNA helicase DDX23.	Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family.	0.994
DDX23	TXNL4B	ENSEEUP00000008818	ENSEEUP00000000222	Probable ATP-dependent RNA helicase DDX23.	Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family.	0.933