STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TMF1TATA element modulatory factor. (720 aa)    
Predicted Functional Partners:
COG8
Conserved oligomeric Golgi complex subunit 8; Belongs to the COG8 family.
     
 0.787
COG4
Conserved oligomeric Golgi complex subunit 4 isoform X1.
     
 0.782
RAB6B
Ras-related protein Rab-6B.
    
 0.729
RAB6A
RAB6A, member RAS oncogene family.
    
 0.729
ENSEEUP00000013972
annotation not available
    
 0.720
GCC2
GRIP and coiled-coil domain-containing protein 2.
   
 0.713
VPS54
Vacuolar protein sorting-associated protein 54 isoform X1.
   
 
 0.712
COG3
Conserved oligomeric Golgi complex subunit 3.
   
 
 0.711
GCC1
GRIP and coiled-coil domain-containing protein 1.
     
 0.711
RAB34
Ras-related protein Rab-34 isoform X1.
    
 0.707
Your Current Organism:
Erinaceus europaeus
NCBI taxonomy Id: 9365
Other names: E. europaeus, European hedgehog, common hedgehog, western European hedgehog
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.