STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LMO1Rhombotin-1. (177 aa)    
Predicted Functional Partners:
LDB1
LIM domain-binding protein 1 isoform X2.
    
 0.883
LDB2
LIM domain binding 2.
    
 0.877
TCF4
Transcription factor 4 isoform X1.
    
 0.704
TCF12
Transcription factor 12.
    
 0.704
GATA2
Endothelial transcription factor GATA-2 isoform X1.
    
 0.688
GATA3
Trans-acting T-cell-specific transcription factor GATA-3 isoform X1.
    
 0.688
GATA1
Erythroid transcription factor.
    
 0.684
TAL2
T-cell acute lymphocytic leukemia protein 1.
    
 0.673
CBFB
Core-binding factor subunit beta isoform X1.
    
  0.642
RUNX2
Runt-related transcription factor 2 isoform X2.
     
 0.609
Your Current Organism:
Erinaceus europaeus
NCBI taxonomy Id: 9365
Other names: E. europaeus, European hedgehog, common hedgehog, western European hedgehog
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.