STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSEEUP00000003800annotation not available (810 aa)    
Predicted Functional Partners:
RAB9B
Ras-related protein Rab-9B.
    
 0.874
VPS41
VPS41 subunit of HOPS complex.
    
 
 0.864
FOXR1
Forkhead box protein R1.
      
 0.765
EPB41L1
Band 4.1-like protein 1 isoform X7.
      
 0.756
GDI1
Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.
   
 0.660
ENSEEUP00000007514
annotation not available
   
 0.653
VPS39
vam6/Vps39-like protein isoform X1.
   
 
 0.646
CCDC138
Coiled-coil domain containing 138.
      
 0.637
RAB13
Ras-related protein Rab-13.
    
 0.614
GAREM1
GRB2-associated and regulator of MAPK protein 1 isoform X1.
    
 0.614
Your Current Organism:
Erinaceus europaeus
NCBI taxonomy Id: 9365
Other names: E. europaeus, European hedgehog, common hedgehog, western European hedgehog
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.