ENSEEUP00000004145 protein (Erinaceus europaeus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSEEUP00000004145

annotation not available (766 aa)

Predicted Functional Partners:

STARD9

0.954

BBS7

0.912

ENSEEUP00000003690

0.910

BBS9

0.908

ZCWPW2

0.839

ZCWPW1

0.839

KIF11

0.839

SLC27A6

0.747

BBS2

0.747

SLC27A3

0.747

Your Current Organism:

Erinaceus europaeus

NCBI taxonomy Id: 9365
Other names: E. europaeus, European hedgehog, common hedgehog, western European hedgehog

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BBS2	BBS7	ENSEEUP00000003223	ENSEEUP00000009143	Bardet-Biedl syndrome 2 protein homolog.	Bardet-Biedl syndrome 7 protein.	0.999
BBS2	BBS9	ENSEEUP00000003223	ENSEEUP00000006114	Bardet-Biedl syndrome 2 protein homolog.	Protein PTHB1.	0.999
BBS2	ENSEEUP00000004145	ENSEEUP00000003223	ENSEEUP00000004145	Bardet-Biedl syndrome 2 protein homolog.	annotation not available	0.747
BBS7	BBS2	ENSEEUP00000009143	ENSEEUP00000003223	Bardet-Biedl syndrome 7 protein.	Bardet-Biedl syndrome 2 protein homolog.	0.999
BBS7	BBS9	ENSEEUP00000009143	ENSEEUP00000006114	Bardet-Biedl syndrome 7 protein.	Protein PTHB1.	0.999
BBS7	ENSEEUP00000004145	ENSEEUP00000009143	ENSEEUP00000004145	Bardet-Biedl syndrome 7 protein.	annotation not available	0.912
BBS7	SLC27A3	ENSEEUP00000009143	ENSEEUP00000004698	Bardet-Biedl syndrome 7 protein.	Long-chain fatty acid transport protein 3.	0.864
BBS7	SLC27A6	ENSEEUP00000009143	ENSEEUP00000001397	Bardet-Biedl syndrome 7 protein.	Long-chain fatty acid transport protein 6.	0.864
BBS9	BBS2	ENSEEUP00000006114	ENSEEUP00000003223	Protein PTHB1.	Bardet-Biedl syndrome 2 protein homolog.	0.999
BBS9	BBS7	ENSEEUP00000006114	ENSEEUP00000009143	Protein PTHB1.	Bardet-Biedl syndrome 7 protein.	0.999
BBS9	ENSEEUP00000004145	ENSEEUP00000006114	ENSEEUP00000004145	Protein PTHB1.	annotation not available	0.908
BBS9	SLC27A3	ENSEEUP00000006114	ENSEEUP00000004698	Protein PTHB1.	Long-chain fatty acid transport protein 3.	0.860
BBS9	SLC27A6	ENSEEUP00000006114	ENSEEUP00000001397	Protein PTHB1.	Long-chain fatty acid transport protein 6.	0.860
ENSEEUP00000003690	ENSEEUP00000004145	ENSEEUP00000003690	ENSEEUP00000004145	annotation not available	annotation not available	0.910
ENSEEUP00000003690	STARD9	ENSEEUP00000003690	ENSEEUP00000004201	annotation not available	stAR-related lipid transfer protein 9; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.792
ENSEEUP00000004145	BBS2	ENSEEUP00000004145	ENSEEUP00000003223	annotation not available	Bardet-Biedl syndrome 2 protein homolog.	0.747
ENSEEUP00000004145	BBS7	ENSEEUP00000004145	ENSEEUP00000009143	annotation not available	Bardet-Biedl syndrome 7 protein.	0.912
ENSEEUP00000004145	BBS9	ENSEEUP00000004145	ENSEEUP00000006114	annotation not available	Protein PTHB1.	0.908
ENSEEUP00000004145	ENSEEUP00000003690	ENSEEUP00000004145	ENSEEUP00000003690	annotation not available	annotation not available	0.910
ENSEEUP00000004145	KIF11	ENSEEUP00000004145	ENSEEUP00000006689	annotation not available	Kinesin-like protein KIF11; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.839