STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PLAAPhospholipase A-2-activating protein isoform X1. (799 aa)    
Predicted Functional Partners:
UFD1
Ubiquitin recognition factor in ER associated degradation 1.
   
 
 0.958
ENSEEUP00000007894
annotation not available
    
 
 0.954
ENSEEUP00000002522
annotation not available
   
 
 0.922
NPLOC4
Nuclear protein localization protein 4 homolog isoform X2.
   
 
 0.922
ENSEEUP00000007414
annotation not available
    
 
 0.912
VCP
Valosin containing protein.
   
 
 0.908
UBXN7
UBX domain-containing protein 7.
   
 
 0.898
UBXN1
UBX domain-containing protein 1 isoform X1.
    
 
 0.889
ENSEEUP00000009513
annotation not available
   
 
 0.881
RPS27A
ubiquitin-40S ribosomal protein S27a.
    
 0.878
Your Current Organism:
Erinaceus europaeus
NCBI taxonomy Id: 9365
Other names: E. europaeus, European hedgehog, common hedgehog, western European hedgehog
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.