STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DDX50ATP-dependent RNA helicase DDX50 isoform X1. (735 aa)    
Predicted Functional Partners:
ARMC8
Armadillo repeat-containing protein 8 isoform X1.
    
 
 0.957
EBNA1BP2
Probable rRNA-processing protein EBP2.
   
 0.883
DHX9
ATP-dependent RNA helicase A isoform X1.
  
 0.883
BOP1
Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.
   
 0.877
DROSHA
Ribonuclease 3.
  
 0.875
WDR12
Ribosome biogenesis protein WDR12; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.
   
 0.872
GNL3
Guanine nucleotide-binding protein-like 3 isoform X1.
  
 0.860
SF3B1
Splicing factor 3B subunit 1 isoform X1.
   
 0.846
DHX38
pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16.
   
 0.845
CCAR1
Cell division cycle and apoptosis regulator protein 1.
   
 
 0.845
Your Current Organism:
Erinaceus europaeus
NCBI taxonomy Id: 9365
Other names: E. europaeus, European hedgehog, common hedgehog, western European hedgehog
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.