STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DDX21Nucleolar RNA helicase 2. (697 aa)    
Predicted Functional Partners:
DHX36
ATP-dependent RNA helicase DHX36 isoform X1.
  
 0.990
SF3B1
Splicing factor 3B subunit 1 isoform X1.
   
 0.971
EBNA1BP2
Probable rRNA-processing protein EBP2.
   
 0.969
MYBBP1A
Myb-binding protein 1A isoform X2.
   
 0.969
BAZ1B
Tyrosine-protein kinase BAZ1B.
   
 
 0.957
GNL3
Guanine nucleotide-binding protein-like 3 isoform X1.
  
 0.955
SMARCA5
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5.
  
 0.952
DDX1
ATP-dependent RNA helicase DDX1.
  
 
0.951
DEK
Protein DEK isoform X2.
     
 0.949
DHX9
ATP-dependent RNA helicase A isoform X1.
  
 0.937
Your Current Organism:
Erinaceus europaeus
NCBI taxonomy Id: 9365
Other names: E. europaeus, European hedgehog, common hedgehog, western European hedgehog
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.