KHDRBS3 protein (Erinaceus europaeus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KHDRBS3

KH domain-containing, RNA-binding, signal transduction-associated protein 3 isoform X1. (316 aa)

Predicted Functional Partners:

KHDRBS1

0.783

NSRP1

0.770

LRRC7

0.768

PTK6

0.731

SRMS

0.731

FYN

0.731

YBX3

0.719

FUBP3

0.687

HNRNPK

0.681

KHDRBS2

0.662

Your Current Organism:

Erinaceus europaeus

NCBI taxonomy Id: 9365
Other names: E. europaeus, European hedgehog, common hedgehog, western European hedgehog

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FUBP3	KHDRBS1	ENSEEUP00000000483	ENSEEUP00000001840	Far upstream element-binding protein 3 isoform X1.	KH domain-containing, RNA-binding, signal transduction-associated protein 1 isoform X1.	0.628
FUBP3	KHDRBS2	ENSEEUP00000000483	ENSEEUP00000003623	Far upstream element-binding protein 3 isoform X1.	KH domain-containing, RNA-binding, signal transduction-associated protein 2.	0.633
FUBP3	KHDRBS3	ENSEEUP00000000483	ENSEEUP00000006427	Far upstream element-binding protein 3 isoform X1.	KH domain-containing, RNA-binding, signal transduction-associated protein 3 isoform X1.	0.687
FYN	KHDRBS1	ENSEEUP00000014327	ENSEEUP00000001840	Tyrosine-protein kinase.	KH domain-containing, RNA-binding, signal transduction-associated protein 1 isoform X1.	0.947
FYN	KHDRBS2	ENSEEUP00000014327	ENSEEUP00000003623	Tyrosine-protein kinase.	KH domain-containing, RNA-binding, signal transduction-associated protein 2.	0.732
FYN	KHDRBS3	ENSEEUP00000014327	ENSEEUP00000006427	Tyrosine-protein kinase.	KH domain-containing, RNA-binding, signal transduction-associated protein 3 isoform X1.	0.731
HNRNPK	KHDRBS1	ENSEEUP00000013356	ENSEEUP00000001840	Heterogeneous nuclear ribonucleoprotein K isoform X1.	KH domain-containing, RNA-binding, signal transduction-associated protein 1 isoform X1.	0.827
HNRNPK	KHDRBS2	ENSEEUP00000013356	ENSEEUP00000003623	Heterogeneous nuclear ribonucleoprotein K isoform X1.	KH domain-containing, RNA-binding, signal transduction-associated protein 2.	0.603
HNRNPK	KHDRBS3	ENSEEUP00000013356	ENSEEUP00000006427	Heterogeneous nuclear ribonucleoprotein K isoform X1.	KH domain-containing, RNA-binding, signal transduction-associated protein 3 isoform X1.	0.681
HNRNPK	YBX3	ENSEEUP00000013356	ENSEEUP00000009494	Heterogeneous nuclear ribonucleoprotein K isoform X1.	Y-box-binding protein 3.	0.689
KHDRBS1	FUBP3	ENSEEUP00000001840	ENSEEUP00000000483	KH domain-containing, RNA-binding, signal transduction-associated protein 1 isoform X1.	Far upstream element-binding protein 3 isoform X1.	0.628
KHDRBS1	FYN	ENSEEUP00000001840	ENSEEUP00000014327	KH domain-containing, RNA-binding, signal transduction-associated protein 1 isoform X1.	Tyrosine-protein kinase.	0.947
KHDRBS1	HNRNPK	ENSEEUP00000001840	ENSEEUP00000013356	KH domain-containing, RNA-binding, signal transduction-associated protein 1 isoform X1.	Heterogeneous nuclear ribonucleoprotein K isoform X1.	0.827
KHDRBS1	KHDRBS2	ENSEEUP00000001840	ENSEEUP00000003623	KH domain-containing, RNA-binding, signal transduction-associated protein 1 isoform X1.	KH domain-containing, RNA-binding, signal transduction-associated protein 2.	0.581
KHDRBS1	KHDRBS3	ENSEEUP00000001840	ENSEEUP00000006427	KH domain-containing, RNA-binding, signal transduction-associated protein 1 isoform X1.	KH domain-containing, RNA-binding, signal transduction-associated protein 3 isoform X1.	0.783
KHDRBS1	PTK6	ENSEEUP00000001840	ENSEEUP00000004454	KH domain-containing, RNA-binding, signal transduction-associated protein 1 isoform X1.	Tyrosine-protein kinase.	0.947
KHDRBS1	SRMS	ENSEEUP00000001840	ENSEEUP00000008335	KH domain-containing, RNA-binding, signal transduction-associated protein 1 isoform X1.	Tyrosine-protein kinase.	0.947
KHDRBS2	FUBP3	ENSEEUP00000003623	ENSEEUP00000000483	KH domain-containing, RNA-binding, signal transduction-associated protein 2.	Far upstream element-binding protein 3 isoform X1.	0.633
KHDRBS2	FYN	ENSEEUP00000003623	ENSEEUP00000014327	KH domain-containing, RNA-binding, signal transduction-associated protein 2.	Tyrosine-protein kinase.	0.732
KHDRBS2	HNRNPK	ENSEEUP00000003623	ENSEEUP00000013356	KH domain-containing, RNA-binding, signal transduction-associated protein 2.	Heterogeneous nuclear ribonucleoprotein K isoform X1.	0.603