STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107522399WD repeat and FYVE domain-containing protein 1-like. (409 aa)    
Predicted Functional Partners:
TAF4
Transcription initiation factor TFIID subunit 4.
   
 0.771
ENSEEUP00000001146
annotation not available
   
 0.753
TAF12
Transcription initiation factor TFIID subunit 12.
    
 0.748
TAF10
Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family.
    
 0.748
TAF2
Transcription initiation factor TFIID subunit 2.
   
 0.747
IFT140
Intraflagellar transport protein 140 homolog.
    
 0.744
WDR19
WD repeat-containing protein 19 isoform X1.
    
 0.742
TEX10
Testis-expressed sequence 10 protein isoform X1.
   
 0.740
ENSEEUP00000008607
annotation not available
    
 0.739
CPSF1
Cleavage and polyadenylation specificity factor subunit 1.
    
 0.736
Your Current Organism:
Erinaceus europaeus
NCBI taxonomy Id: 9365
Other names: E. europaeus, European hedgehog, common hedgehog, western European hedgehog
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