STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LETMD1LETM1 domain-containing protein 1 isoform X1. (360 aa)    
Predicted Functional Partners:
EIF2D
Eukaryotic translation initiation factor 2D.
   
    0.565
PJA2
E3 ubiquitin-protein ligase Praja-2.
    
 
 0.520
CSDC2
Cold shock domain-containing protein C2.
      
 0.482
MBOAT2
Lysophospholipid acyltransferase 2; Belongs to the membrane-bound acyltransferase family.
      
 0.474
RBM23
Probable RNA-binding protein 23 isoform X1.
      
 0.463
FAM160B1
Protein FAM160B1.
      
 0.450
FOCAD
Focadhesin.
      
 0.435
SNX4
Sorting nexin-4 isoform X1.
      
 0.422
Your Current Organism:
Erinaceus europaeus
NCBI taxonomy Id: 9365
Other names: E. europaeus, European hedgehog, common hedgehog, western European hedgehog
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.