STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RNF185E3 ubiquitin-protein ligase RNF185 isoform X1. (190 aa)    
Predicted Functional Partners:
ERLIN2
Erlin-2.
   
 0.926
RNF5
E3 ubiquitin-protein ligase RNF5.
  
  
 
0.868
ENSEEUP00000003419
annotation not available
 
    
 0.861
TMUB2
Transmembrane and ubiquitin-like domain-containing protein 2 isoform X2.
    
 
 0.832
UBE2J1
Ubiquitin-conjugating enzyme E2 J1.
    
 
 0.809
ENSEEUP00000010619
annotation not available
    
 0.790
RNF175
RING finger protein 175 isoform X1.
 
    
 0.784
HERPUD2
HERPUD family member 2.
      
 0.768
CFTR
Cystic fibrosis transmembrane conductance regulator; Epithelial ion channel that plays an important role in the regulation of epithelial ion and water transport and fluid homeostasis. Mediates the transport of chloride ions across the cell membrane. Channel activity is coupled to ATP hydrolysis. The ion channel is also permeable to HCO(3-); selectivity depends on the extracellular chloride concentration. Exerts its function also by modulating the activity of other ion channels and transporters. Contributes to the regulation of the pH and the ion content of the epithelial fluid layer.
    
 0.768
NPLOC4
Nuclear protein localization protein 4 homolog isoform X2.
   
  
 0.746
Your Current Organism:
Erinaceus europaeus
NCBI taxonomy Id: 9365
Other names: E. europaeus, European hedgehog, common hedgehog, western European hedgehog
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