STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RNF128Ring finger protein 128. (431 aa)    
Predicted Functional Partners:
OTUB2
Ubiquitin thioesterase OTUB2.
    
 0.791
ENSEEUP00000001019
annotation not available
    
 0.726
LOC103118874
Uncharacterized protein LOC103118874.
    
 0.692
ASB11
LOW QUALITY PROTEIN: ankyrin repeat and SOCS box protein 11.
      
 0.601
ENSEEUP00000003877
annotation not available
    
 0.595
USP2
Ubiquitin carboxyl-terminal hydrolase; Deubiquitinating enzyme that removes conjugated ubiquitin from specific proteins to regulate different cellular processes. Belongs to the peptidase C19 family.
    
 0.595
TCEAL1
Transcription elongation factor A protein-like 1.
      
 0.581
RPS27A
ubiquitin-40S ribosomal protein S27a.
    
  0.568
ASB9
Ankyrin repeat and SOCS box containing 9.
      
 0.529
RC3H1
Roquin-1 isoform X1.
      
 0.491
Your Current Organism:
Erinaceus europaeus
NCBI taxonomy Id: 9365
Other names: E. europaeus, European hedgehog, common hedgehog, western European hedgehog
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