STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DHX30Putative ATP-dependent RNA helicase DHX30. (989 aa)    
Predicted Functional Partners:
ENSEEUP00000010018
annotation not available
    
  0.952
LOC103111782
LOW QUALITY PROTEIN: AP-2 complex subunit mu-like; Belongs to the adaptor complexes medium subunit family.
    
 0.844
SF3B3
Splicing factor 3B subunit 3.
   
 0.842
ITSN1
Intersectin-1 isoform X3.
    
  0.838
EXOSC8
Exosome complex component RRP43.
   
 0.836
EXOSC5
Exosome complex component RRP46.
    
 0.831
UTP6
U3 small nucleolar RNA-associated protein 6 homolog.
   
 
 0.804
DDX28
Probable ATP-dependent RNA helicase DDX28.
   
 0.802
UTP18
U3 small nucleolar RNA-associated protein 18 homolog.
   
 0.801
AP2S1
AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.
    
 0.798
Your Current Organism:
Erinaceus europaeus
NCBI taxonomy Id: 9365
Other names: E. europaeus, European hedgehog, common hedgehog, western European hedgehog
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.