STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ANKRD13CAnkyrin repeat domain-containing protein 13C. (397 aa)    
Predicted Functional Partners:
ENSEEUP00000006207
annotation not available
     
 0.642
RTP4
Receptor-transporting protein 4.
      
 0.637
ARL5A
ADP-ribosylation factor-like protein 5A isoform X1; Belongs to the small GTPase superfamily. Arf family.
      
 0.512
ENSEEUP00000001056
annotation not available
      
 0.483
AVEN
Cell death regulator Aven.
      
 0.476
NAT10
RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein THUMPD1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.
      
 0.468
TYW3
tRNA wybutosine-synthesizing protein 3 homolog isoform X1.
      
 0.468
ALX1
ALX homeobox protein 1.
      
 0.465
UBP1
Upstream-binding protein 1 isoform X5.
      
 0.453
TREH
Trehalase.
      
 0.450
Your Current Organism:
Erinaceus europaeus
NCBI taxonomy Id: 9365
Other names: E. europaeus, European hedgehog, common hedgehog, western European hedgehog
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.