STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRIM62E3 ubiquitin-protein ligase TRIM62. (290 aa)    
Predicted Functional Partners:
TRIM44
Tripartite motif-containing protein 44.
    
 
 0.871
TRIM9
E3 ubiquitin-protein ligase TRIM9 isoform X1.
      
 0.793
ENSEEUP00000001469
annotation not available
      
 0.771
CARD9
Caspase recruitment domain-containing protein 9 isoform X1.
   
 
 0.771
ENSEEUP00000010655
annotation not available
      
 0.685
RPS27A
ubiquitin-40S ribosomal protein S27a.
    
  0.642
TRIM8
Probable E3 ubiquitin-protein ligase TRIM8.
      
0.639
ENSEEUP00000003345
annotation not available
    
 0.614
TRIM3
Tripartite motif-containing protein 3.
   
  
 0.591
DTNBP1
Dysbindin isoform X1.
    
 
 0.589
Your Current Organism:
Erinaceus europaeus
NCBI taxonomy Id: 9365
Other names: E. europaeus, European hedgehog, common hedgehog, western European hedgehog
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.