STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ERCC1DNA excision repair protein ERCC-1 isoform X2. (232 aa)    
Predicted Functional Partners:
FANCM
Fanconi anemia group M protein.
   
 0.999
ERCC4
DNA repair endonuclease XPF.
   
 0.999
XPA
DNA repair protein complementing XP-A cells.
    
 0.995
SLX4
Structure-specific endonuclease subunit SLX4.
   
 0.982
FANCL
E3 ubiquitin-protein ligase FANCL.
    
 0.942
MUS81
Crossover junction endonuclease MUS81 isoform X3.
   
 0.939
ENSEEUP00000000900
annotation not available
    
 0.927
ENSEEUP00000011467
annotation not available
    
 0.907
EME1
Crossover junction endonuclease EME1 isoform X1.
    
 0.900
NARS1
asparagine--tRNA ligase, cytoplasmic isoform X1.
   
 0.895
Your Current Organism:
Erinaceus europaeus
NCBI taxonomy Id: 9365
Other names: E. europaeus, European hedgehog, common hedgehog, western European hedgehog
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.