STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LMNB1lamin-B1; Belongs to the intermediate filament family. (412 aa)    
Predicted Functional Partners:
EMD
Emerin.
    
 0.990
LMNA
Lamin isoform X1; Belongs to the intermediate filament family.
    
0.989
SUN1
Sad1 and UNC84 domain containing 1.
    
 0.953
ENSEEUP00000014373
annotation not available
    
 0.934
SYNE2
Nesprin-2-like.
    
 0.919
ENSEEUP00000007231
annotation not available
   
 0.905
SYNE1
Nesprin-1-like.
    
 0.904
LBR
lamin-B receptor.
   
 
 0.893
NUP153
LOW QUALITY PROTEIN: nuclear pore complex protein Nup153.
    
 
 0.882
CTSG
Cathepsin G-like; Belongs to the peptidase S1 family.
    
 0.828
Your Current Organism:
Erinaceus europaeus
NCBI taxonomy Id: 9365
Other names: E. europaeus, European hedgehog, common hedgehog, western European hedgehog
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.