STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
U2SURPU2 snRNP-associated SURP motif-containing protein isoform X1. (1028 aa)    
Predicted Functional Partners:
RBM17
Splicing factor 45.
   
 0.996
DHX15
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 isoform X1.
   
 0.983
DDX46
Probable ATP-dependent RNA helicase DDX46.
   
 0.965
SNRPA1
LOW QUALITY PROTEIN: U2 small nuclear ribonucleoprotein A.
   
  0.951
SNRPB2
U2 small nuclear ribonucleoprotein B'.
   
 0.943
ENSEEUP00000011279
annotation not available
   
 0.923
SF3B1
Splicing factor 3B subunit 1 isoform X1.
   
 0.921
SMNDC1
Survival of motor neuron-related-splicing factor 30 isoform X1.
    
  0.920
ENSEEUP00000012210
annotation not available
    
  0.920
SF3B3
Splicing factor 3B subunit 3.
    
 0.894
Your Current Organism:
Erinaceus europaeus
NCBI taxonomy Id: 9365
Other names: E. europaeus, European hedgehog, common hedgehog, western European hedgehog
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.