STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSEEUP00000013094annotation not available (560 aa)    
Predicted Functional Partners:
OTUD6B
OTU domain-containing protein 6B.
   
  
 0.751
ERCC1
DNA excision repair protein ERCC-1 isoform X2.
    
 0.677
RPS27A
ubiquitin-40S ribosomal protein S27a.
    
  0.637
AP4E1
AP-4 complex subunit epsilon-1 isoform X1.
   
    0.633
ENSEEUP00000002027
annotation not available
    
 0.572
UBR1
E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.
   
  
 0.558
STX1B
syntaxin-1B; Belongs to the syntaxin family.
      
 0.553
OTULIN
Ubiquitin thioesterase otulin isoform X3.
      
 0.553
OTUD4
OTU domain-containing protein 4.
   
  
 0.551
XRN1
5'-3' exoribonuclease 1.
   
    0.546
Your Current Organism:
Erinaceus europaeus
NCBI taxonomy Id: 9365
Other names: E. europaeus, European hedgehog, common hedgehog, western European hedgehog
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