STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COL16A1Collagen alpha-1(XVI) chain. (1605 aa)    
Predicted Functional Partners:
ENSEEUP00000014503
annotation not available
   
 0.782
COL5A2
Collagen alpha-2(V) chain.
  
0.765
ITGA10
Integrin alpha-10 isoform X1; Belongs to the integrin alpha chain family.
     
 0.764
COL1A2
Collagen alpha-2(I) chain.
  
0.752
COL3A1
Collagen alpha-1(III) chain.
  
0.743
SERPINH1
Serpin H1; Belongs to the serpin family.
   
 0.703
ITGB6
Integrin beta; Belongs to the integrin beta chain family.
    
 0.695
ENSEEUP00000002992
annotation not available
   
 0.694
PLOD2
Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2.
   
 0.689
COL11A2
Collagen alpha-2(XI) chain isoform X1.
  
0.680
Your Current Organism:
Erinaceus europaeus
NCBI taxonomy Id: 9365
Other names: E. europaeus, European hedgehog, common hedgehog, western European hedgehog
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.