STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CTCFTranscriptional repressor CTCF isoform X2. (726 aa)    
Predicted Functional Partners:
RAD21
Double-strand-break repair protein rad21 homolog.
   
 0.914
STAG2
Cohesin subunit SA-2.
   
 
 0.874
AK9
Adenylate kinase 9.
    
  0.710
ENSEEUP00000007878
annotation not available
    
  0.710
INO80D
INO80 complex subunit D.
    
 0.682
EP300
Histone acetyltransferase p300.
   
 0.675
WRAP53
WD repeat containing antisense to TP53.
     
 0.657
ENSEEUP00000010821
annotation not available
   
 0.653
STAG1
Cohesin subunit SA-1 isoform X1.
   
 
 0.651
POU5F1
POU domain protein.
    
 0.620
Your Current Organism:
Erinaceus europaeus
NCBI taxonomy Id: 9365
Other names: E. europaeus, European hedgehog, common hedgehog, western European hedgehog
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.