STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TMCO6Transmembrane and coiled-coil domain-containing protein 6 isoform X1. (216 aa)    
Predicted Functional Partners:
KPNB1
Importin subunit beta-1.
   
 0.833
CSE1L
Exportin-2.
   
 0.793
RANBP2
E3 SUMO-protein ligase RanBP2 isoform X1.
   
 
 0.666
NUP153
LOW QUALITY PROTEIN: nuclear pore complex protein Nup153.
    
 
 0.639
NCBP1
Nuclear cap-binding protein subunit 1.
   
 
 0.633
GCC2
GRIP and coiled-coil domain-containing protein 2.
   
 
 0.622
RANBP1
Ran-specific GTPase-activating protein.
   
 
 0.622
NUP50
Nuclear pore complex protein Nup50.
   
 
 0.617
ENSEEUP00000003553
annotation not available
   
 
 0.609
ADGRB3
Adhesion G protein-coupled receptor B3-like.
   
 
 0.609
Your Current Organism:
Erinaceus europaeus
NCBI taxonomy Id: 9365
Other names: E. europaeus, European hedgehog, common hedgehog, western European hedgehog
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