EJO22187.1 protein (Selenomonas sp. FOBRC6) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

EJO22187.1

Signal transduction four helix bundle sensory module. (574 aa)

Predicted Functional Partners:

EJO23433.1

0.998

EJO21338.1

0.994

EJO17689.1

0.989

EJO17646.1

0.982

EJO22304.1

0.975

cheB

0.969

cheD

0.957

cheY

0.882

EJO22194.1

0.801

ilvN_1

0.641

Your Current Organism:

Selenomonas sp. FOBRC6

NCBI taxonomy Id: 936572
Other names: S. sp. FOBRC6

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EJO17646.1	EJO17689.1	HMPREF1148_0047	HMPREF1148_0048	Chemotaxis protein CheW family protein.	Putative chemotaxis protein CheA.	0.999
EJO17646.1	EJO21338.1	HMPREF1148_0047	HMPREF1148_0611	Chemotaxis protein CheW family protein.	Response regulator receiver domain protein.	0.964
EJO17646.1	EJO22187.1	HMPREF1148_0047	HMPREF1148_0004	Chemotaxis protein CheW family protein.	Signal transduction four helix bundle sensory module.	0.982
EJO17646.1	EJO22304.1	HMPREF1148_0047	HMPREF1148_1163	Chemotaxis protein CheW family protein.	Methyltransferase CheR, SAM binding domain protein.	0.964
EJO17646.1	EJO23433.1	HMPREF1148_0047	HMPREF1148_0612	Chemotaxis protein CheW family protein.	CheW-like protein.	0.987
EJO17646.1	cheB	HMPREF1148_0047	HMPREF1148_0049	Chemotaxis protein CheW family protein.	Protein-glutamate methylesterase CheB.	0.998
EJO17646.1	cheD	HMPREF1148_0047	HMPREF1148_0045	Chemotaxis protein CheW family protein.	CheD chemotactic sensory transduction; Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis; Belongs to the CheD family.	0.975
EJO17646.1	cheY	HMPREF1148_0047	HMPREF1148_0059	Chemotaxis protein CheW family protein.	Chemotaxis protein CheY.	0.932
EJO17689.1	EJO17646.1	HMPREF1148_0048	HMPREF1148_0047	Putative chemotaxis protein CheA.	Chemotaxis protein CheW family protein.	0.999
EJO17689.1	EJO21338.1	HMPREF1148_0048	HMPREF1148_0611	Putative chemotaxis protein CheA.	Response regulator receiver domain protein.	0.999
EJO17689.1	EJO22187.1	HMPREF1148_0048	HMPREF1148_0004	Putative chemotaxis protein CheA.	Signal transduction four helix bundle sensory module.	0.989
EJO17689.1	EJO22194.1	HMPREF1148_0048	HMPREF1148_0005	Putative chemotaxis protein CheA.	Periplasmic-binding protein domain protein.	0.554
EJO17689.1	EJO22304.1	HMPREF1148_0048	HMPREF1148_1163	Putative chemotaxis protein CheA.	Methyltransferase CheR, SAM binding domain protein.	0.984
EJO17689.1	EJO23433.1	HMPREF1148_0048	HMPREF1148_0612	Putative chemotaxis protein CheA.	CheW-like protein.	0.999
EJO17689.1	cheB	HMPREF1148_0048	HMPREF1148_0049	Putative chemotaxis protein CheA.	Protein-glutamate methylesterase CheB.	0.999
EJO17689.1	cheD	HMPREF1148_0048	HMPREF1148_0045	Putative chemotaxis protein CheA.	CheD chemotactic sensory transduction; Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis; Belongs to the CheD family.	0.989
EJO17689.1	cheY	HMPREF1148_0048	HMPREF1148_0059	Putative chemotaxis protein CheA.	Chemotaxis protein CheY.	0.970
EJO21338.1	EJO17646.1	HMPREF1148_0611	HMPREF1148_0047	Response regulator receiver domain protein.	Chemotaxis protein CheW family protein.	0.964
EJO21338.1	EJO17689.1	HMPREF1148_0611	HMPREF1148_0048	Response regulator receiver domain protein.	Putative chemotaxis protein CheA.	0.999
EJO21338.1	EJO22187.1	HMPREF1148_0611	HMPREF1148_0004	Response regulator receiver domain protein.	Signal transduction four helix bundle sensory module.	0.994