Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SFQ20043.1Hypothetical protein. (237 aa)    
Predicted Functional Partners:
SFQ52723.1
Hypothetical protein.
  
     0.754
gatC
aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatC family.
       0.741
gatA
aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln).
       0.741
SFQ18846.1
Hypothetical protein.
  
     0.712
SFQ46306.1
Hypothetical protein.
  
     0.703
SFP99680.1
Hypothetical protein.
  
     0.682
SFQ20061.1
N-acetylmuramoyl-L-alanine amidase.
       0.665
SFQ27335.1
Protein RodZ, contains Xre-like HTH and DUF4115 domains.
  
     0.663
SFQ30469.1
Hypothetical protein.
  
     0.647
SFQ27634.1
Hypothetical protein.
  
     0.633
Your Current Organism:
Roseivivax halotolerans
NCBI taxonomy Id: 93684
Other names: ATCC 700842, CIP 105984, DSM 15490, IFO 16686, JCM 10271, NBRC 16686, R. halotolerans, strain Och 210
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