STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SNRNP200Small nuclear ribonucleoprotein U5 subunit 200. (2136 aa)    
Predicted Functional Partners:
PRPF6
pre-mRNA processing factor 6.
   
 0.999
EFTUD2
Elongation factor Tu GTP binding domain containing 2.
   
 0.999
SNRNP40
Small nuclear ribonucleoprotein U5 subunit 40.
   
 0.999
PRPF8
pre-mRNA processing factor 8.
   
 0.999
SNRPF
Small nuclear ribonucleoprotein polypeptide F.
   
 0.998
SF3B3
Splicing factor 3b subunit 3.
   
 
 0.998
ENSETEP00000002365
annotation not available
   
 0.997
SNRPD1
Small nuclear ribonucleoprotein D1 polypeptide.
   
 0.997
SNRPG
Small nuclear ribonucleoprotein polypeptide G.
   
  0.996
SNU13
Small nuclear ribonucleoprotein 13.
   
 0.996
Your Current Organism:
Echinops telfairi
NCBI taxonomy Id: 9371
Other names: E. telfairi, Echinops telfairii, lesser hedgehog tenrec, small Madagascar hedgehog
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.