STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ARID5BAT-rich interaction domain 5B. (1188 aa)    
Predicted Functional Partners:
PHF2
PHD finger protein 2.
     
 0.863
ENSETEP00000011147
annotation not available
    
 
 0.738
PBRM1
Polybromo 1.
   
 
 0.724
ENSETEP00000006324
annotation not available
    
 0.713
ENSETEP00000006883
annotation not available
    
 0.713
HDAC1
Histone deacetylase 1.
    
 0.713
C16orf87
Chromosome 16 open reading frame 87.
    
 
 0.706
SUDS3
SDS3 homolog, SIN3A corepressor complex component.
    
 0.705
BRMS1L
BRMS1 like transcriptional repressor.
    
 0.705
SAP30L
SAP30 like.
    
 0.703
Your Current Organism:
Echinops telfairi
NCBI taxonomy Id: 9371
Other names: E. telfairi, Echinops telfairii, lesser hedgehog tenrec, small Madagascar hedgehog
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