STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RBBP6RB binding protein 6, ubiquitin ligase. (1785 aa)    
Predicted Functional Partners:
WDR33
WD repeat domain 33.
   
 0.999
CPSF4
Cleavage and polyadenylation specific factor 4.
    
 0.998
CPSF3
Cleavage and polyadenylation specific factor 3.
    
 0.998
CPSF1
Cleavage and polyadenylation specific factor 1.
    
 0.998
CPSF2
Cleavage and polyadenylation specific factor 2.
    
 0.998
ENSETEP00000008705
annotation not available
    
 0.994
WDR82
WD repeat domain 82.
    
 0.994
ENSETEP00000014846
annotation not available
    
 0.994
WDR77
WD repeat domain 77.
   
 0.990
UBE3D
Ubiquitin protein ligase E3D.
    
 0.988
Your Current Organism:
Echinops telfairi
NCBI taxonomy Id: 9371
Other names: E. telfairi, Echinops telfairii, lesser hedgehog tenrec, small Madagascar hedgehog
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.