STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SGCASarcoglycan alpha. (387 aa)    
Predicted Functional Partners:
NMB
Neuromedin B.
     
 0.831
ENSETEP00000009673
annotation not available
     
 0.831
DAG1
Dystroglycan 1.
    
 
 0.738
SGCD
Sarcoglycan delta.
   
 
 0.729
SSPN
Sarcospan.
   
  
 0.659
TDP1
tyrosyl-DNA phosphodiesterase 1.
      
 0.620
SNTA1
Syntrophin alpha 1.
    
 
 0.596
SNTB1
Syntrophin beta 1.
    
 
 0.563
ENSETEP00000014463
annotation not available
      
 0.535
LAMA2
Laminin subunit alpha 2.
      
 0.533
Your Current Organism:
Echinops telfairi
NCBI taxonomy Id: 9371
Other names: E. telfairi, Echinops telfairii, lesser hedgehog tenrec, small Madagascar hedgehog
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.