STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZCCHC3Zinc finger CCHC-type containing 3. (365 aa)    
Predicted Functional Partners:
MTREX
Mtr4 exosome RNA helicase.
   
 
 0.757
ENSETEP00000010157
annotation not available
   
 
 0.660
TENT4A
Terminal nucleotidyltransferase 4A.
   
 
 0.660
MRPL16
Mitochondrial ribosomal protein L16.
   
  0.608
ENSETEP00000000518
annotation not available
    
  0.572
SERBP1
SERPINE1 mRNA binding protein 1.
   
 
 0.564
TRIM38
Tripartite motif containing 38.
   
 
 0.562
SKIV2L
Ski2 like RNA helicase.
   
 
 0.559
EIF2A
Eukaryotic translation initiation factor 2A.
    
  0.555
GAREM1
GRB2 associated regulator of MAPK1 subtype 1.
    
 
 0.541
Your Current Organism:
Echinops telfairi
NCBI taxonomy Id: 9371
Other names: E. telfairi, Echinops telfairii, lesser hedgehog tenrec, small Madagascar hedgehog
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.