STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RFFLRing finger and FYVE like domain containing E3 ubiquitin protein ligase. (355 aa)    
Predicted Functional Partners:
RNF34
Ring finger protein 34.
  
 
  
0.584
ENSETEP00000007296
annotation not available
    
  0.580
ENSETEP00000008111
annotation not available
    
  0.580
DNAJB12
DnaJ heat shock protein family (Hsp40) member B12.
    
 
 0.537
ENSETEP00000005981
annotation not available
      
 0.534
ENSETEP00000011260
annotation not available
      
 0.519
EFCAB7
EF-hand calcium binding domain 7.
    
   0.493
TPRA1
Transmembrane protein adipocyte associated 1.
      
 0.476
DNAJB14
DnaJ heat shock protein family (Hsp40) member B14.
    
 
 0.465
ENSETEP00000013140
annotation not available
      
 0.459
Your Current Organism:
Echinops telfairi
NCBI taxonomy Id: 9371
Other names: E. telfairi, Echinops telfairii, lesser hedgehog tenrec, small Madagascar hedgehog
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.