STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NUDT21Nudix hydrolase 21. (220 aa)    
Predicted Functional Partners:
CPSF6
Cleavage and polyadenylation specific factor 6.
   
 0.996
CPSF7
Cleavage and polyadenylation specific factor 7.
   
 0.995
ENSETEP00000014846
annotation not available
   
 0.990
CPSF4
Cleavage and polyadenylation specific factor 4.
    
 0.982
YTHDC2
YTH domain containing 2.
   
 0.975
ZC3H6
Zinc finger CCCH-type containing 6.
    
 0.964
ZC3H4
Zinc finger CCCH-type containing 4.
    
 0.956
ENSETEP00000012026
annotation not available
    
 0.956
ZC3H8
Zinc finger CCCH-type containing 8.
    
 0.956
YTHDC1
YTH domain containing 1.
    
 
 0.951
Your Current Organism:
Echinops telfairi
NCBI taxonomy Id: 9371
Other names: E. telfairi, Echinops telfairii, lesser hedgehog tenrec, small Madagascar hedgehog
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.