STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LIG4DNA ligase 4. (902 aa)    
Predicted Functional Partners:
XRCC5
X-ray repair cross complementing 5.
   
 0.993
ENSETEP00000012426
annotation not available
   
 0.992
PRKDC
Protein kinase, DNA-activated, catalytic subunit.
   
 0.987
XRCC1
X-ray repair cross complementing 1.
   
 0.974
ENSETEP00000005344
annotation not available
   
 0.963
ENSETEP00000010514
annotation not available
   
 0.963
DCLRE1C
DNA cross-link repair 1C.
   
 0.928
REC114
REC114 meiotic recombination protein.
   
 0.913
APLF
Aprataxin and PNKP like factor.
    
 
 0.912
ENSETEP00000008337
annotation not available
    
 0.909
Your Current Organism:
Echinops telfairi
NCBI taxonomy Id: 9371
Other names: E. telfairi, Echinops telfairii, lesser hedgehog tenrec, small Madagascar hedgehog
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.