STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSETEP00000012622annotation not available (80 aa)    
Predicted Functional Partners:
SF3B6
Splicing factor 3b subunit 6.
   
 0.978
SNRPG
Small nuclear ribonucleoprotein polypeptide G.
   
 0.976
SNRPF
Small nuclear ribonucleoprotein polypeptide F.
   
 0.975
ZMAT5
Zinc finger matrin-type 5.
   
 0.972
SF3B1
Splicing factor 3b subunit 1.
   
 0.972
SF3B4
Splicing factor 3b subunit 4.
   
 0.969
SF3B5
Splicing factor 3b subunit 5.
   
 0.968
ENSETEP00000002365
annotation not available
   
 0.967
SF3B2
Splicing factor 3b subunit 2.
   
 0.967
SF3B3
Splicing factor 3b subunit 3.
   
 0.965
Your Current Organism:
Echinops telfairi
NCBI taxonomy Id: 9371
Other names: E. telfairi, Echinops telfairii, lesser hedgehog tenrec, small Madagascar hedgehog
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.