STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRRTSerrate, RNA effector molecule. (879 aa)    
Predicted Functional Partners:
NCBP2
Nuclear cap binding protein subunit 2.
    
 0.995
NCBP1
Nuclear cap binding protein subunit 1.
   
 0.994
MTREX
Mtr4 exosome RNA helicase.
   
 0.992
ALYREF
Aly/REF export factor.
   
 0.990
CWC22
CWC22 spliceosome associated protein homolog.
   
 
  0.978
PPIL1
Peptidylprolyl isomerase like 1.
     
 0.974
PPWD1
Peptidylprolyl isomerase domain and WD repeat containing 1.
   
 
  0.973
PPIL2
Peptidylprolyl isomerase like 2.
   
 
  0.973
PHAX
Phosphorylated adaptor for RNA export.
   
 0.966
SRRM1
Serine and arginine repetitive matrix 1.
   
 
  0.959
Your Current Organism:
Echinops telfairi
NCBI taxonomy Id: 9371
Other names: E. telfairi, Echinops telfairii, lesser hedgehog tenrec, small Madagascar hedgehog
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.