STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP68299.1Alpha-mannosidase. (939 aa)    
Predicted Functional Partners:
SFP63535.1
Glycerate kinase; Belongs to the glycerate kinase type-1 family.
    
  0.718
SFP68267.1
Alpha-mannosidase.
 
    
0.625
SFQ34845.1
ADP-ribosylglycohydrolase.
  
     0.584
SFP68329.1
Carbohydrate ABC transporter membrane protein 2, CUT1 family.
       0.481
SFQ10293.1
Beta-galactosidase trimerisation domain-containing protein.
  
     0.441
SFP68378.1
Carbohydrate ABC transporter substrate-binding protein, CUT1 family.
 
     0.438
SFQ48408.1
Protein of unknown function.
 
     0.421
SFP68350.1
Carbohydrate ABC transporter membrane protein 1, CUT1 family.
       0.404
Your Current Organism:
Caldicoprobacter faecalis
NCBI taxonomy Id: 937334
Other names: Acetomicrobium faecale, Acetomicrobium faecalis, C. faecalis, DSM 20678, JCM 30420
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.