STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP76114.1N-acetyl-anhydromuramyl-L-alanine amidase AmpD. (315 aa)    
Predicted Functional Partners:
SFP67240.1
Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases-containing protein.
 
 
0.904
SFQ18483.1
LysM domain-containing protein.
    
 0.893
SFQ39053.1
Lipoprotein-anchoring transpeptidase ErfK/SrfK.
    
 0.807
SFQ46545.1
Putative peptidoglycan binding domain-containing protein.
    
 0.807
murC
UDP-N-acetylmuramate--L-alanine ligase; Cell wall formation; Belongs to the MurCDEF family.
     
 0.699
SFP85048.1
Cell wall-associated hydrolase, NlpC family.
 
 
 0.682
SFP62298.1
Putative peptidoglycan binding domain-containing protein.
  
  
 0.633
SFQ16640.1
N-acetylmuramoyl-L-alanine amidase.
   
 
 0.633
SFP76140.1
Calcineurin-like phosphoesterase.
       0.608
SFP76169.1
AAA domain-containing protein.
       0.608
Your Current Organism:
Caldicoprobacter faecalis
NCBI taxonomy Id: 937334
Other names: Acetomicrobium faecale, Acetomicrobium faecalis, C. faecalis, DSM 20678, JCM 30420
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