STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP74543.1Transcriptional regulator, GntR family. (125 aa)    
Predicted Functional Partners:
SFP74484.1
Hypothetical protein.
 
  
 0.980
SFP74510.1
ABC-2 type transport system ATP-binding protein.
 
  
 0.976
SFQ35922.1
Transcriptional regulator, GntR family.
  
     0.738
SFQ36074.1
ABC-2 type transport system ATP-binding protein.
 
    0.649
SFQ35960.1
ABC-2 type transport system ATP-binding protein.
 
    0.600
SFQ09790.1
ABC-2 type transport system ATP-binding protein.
  
    0.549
SFQ37855.1
ABC-2 type transport system ATP-binding protein.
  
    0.549
SFQ29470.1
Flagellar basal-body rod protein FlgG.
   
    0.542
SFP74575.1
Hypothetical protein.
       0.488
Your Current Organism:
Caldicoprobacter faecalis
NCBI taxonomy Id: 937334
Other names: Acetomicrobium faecale, Acetomicrobium faecalis, C. faecalis, DSM 20678, JCM 30420
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.