STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP80158.1Yip1 domain-containing protein. (229 aa)    
Predicted Functional Partners:
SFP80181.1
Hypothetical protein.
      0.967
SFP80209.1
ABC-type glycerol-3-phosphate transport system, permease component.
       0.757
SFP80236.1
Carbohydrate ABC transporter membrane protein 1, CUT1 family.
       0.757
SFP80127.1
Hypothetical protein.
       0.727
SFP80268.1
ABC-type glycerol-3-phosphate transport system, substrate-binding protein.
       0.699
SFP80069.1
Multiple sugar transport system permease protein.
       0.672
SFP80095.1
ABC-type sugar transport system, permease component.
       0.672
SFP80037.1
Carbohydrate family 9 binding domain-like.
       0.589
SFP80018.1
Transglutaminase-like superfamily protein.
       0.544
SFP80302.1
ABC-type glycerol-3-phosphate transport system, substrate-binding protein.
       0.450
Your Current Organism:
Caldicoprobacter faecalis
NCBI taxonomy Id: 937334
Other names: Acetomicrobium faecale, Acetomicrobium faecalis, C. faecalis, DSM 20678, JCM 30420
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