STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP85266.1Polysaccharide deacetylase. (265 aa)    
Predicted Functional Partners:
SFQ37567.1
Glycosyltransferase, catalytic subunit of cellulose synthase and poly-beta-1,6-N-acetylglucosamine synthase.
 
 
 0.726
SFP85238.1
Sialate O-acetylesterase.
       0.689
SFP80127.1
Hypothetical protein.
  
     0.673
SFP80181.1
Hypothetical protein.
  
     0.653
SFP80268.1
ABC-type glycerol-3-phosphate transport system, substrate-binding protein.
  
     0.639
SFQ16041.1
ABC-type glycerol-3-phosphate transport system, substrate-binding protein.
  
     0.588
SFQ16162.1
Hypothetical protein.
  
     0.570
SFP85130.1
Multiple sugar transport system substrate-binding protein/putative aldouronate transport system substrate-binding protein.
  
     0.505
SFP73255.1
Succinyl-diaminopimelate desuccinylase.
    
  0.491
SFQ14439.1
alpha-L-rhamnosidase.
  
     0.467
Your Current Organism:
Caldicoprobacter faecalis
NCBI taxonomy Id: 937334
Other names: Acetomicrobium faecale, Acetomicrobium faecalis, C. faecalis, DSM 20678, JCM 30420
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.